Research Article | | Peer-Reviewed

Penalized Likelihood Estimation for Current Status Data with Informative Censoring

Received: 23 March 2024     Accepted: 26 August 2024     Published: 29 October 2024
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Abstract

Current status data occurs when failure time of subjects in a survival study is only known to be either less or greater than the censoring time. Thus, the failure time is either left – or right – censored. Analyzing data of this structure under the Cox Proportional Hazards model with dependent censoring assumption can be challenging. To address this, a Penalized Maximum Likelihood Estimation (PMLE) approach was proposed. The unknown baseline cumulative hazard functions for both the failure time and the censoring time were estimated using splines. The advantage of penalized approach over unpenalized method is that that the desired smoothness level of the functions are controlled by their respective penalty terms. The possible dependence between the failure and censoring times was accounted for using the gamma-frailty model. An easy to implement hybrid computational algorithm is proposed to estimate the PMLEs and the Bayesian technique was employed for the estimation of the variances of the parameters. Extensive simulation studies were conducted to assess the statistical properties of the PMLEs. It was observed that the realized estimators were not only consistent, asymptotically normal and efficient, but also, were robust to the number of knots chosen, the proportion of dependent censoring used and the frailty distribution employed. The proposed PMLE method was further applied to real data obtained from tumorigenicity experiment.

Published in Biomedical Statistics and Informatics (Volume 9, Issue 3)
DOI 10.11648/j.bsi.20240903.11
Page(s) 39-57
Creative Commons

This is an Open Access article, distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution and reproduction in any medium or format, provided the original work is properly cited.

Copyright

Copyright © The Author(s), 2024. Published by Science Publishing Group

Keywords

Current Status Data, Splines, Proportional Hazards Model, Penalized Maximum Likelihood Estimation, Frailty Model

References
[1] Chen, C. M., Lu, T. F. C., Chen, M. H. and Hsu, C. M. (2012). Semiparametric transformation models for current status data with informative censoring. Biometrical Journal, 54, 641–656.
[2] De Boor, C. (1978). A Practical Guide to Splines. Springer, New York.
[3] Eilers, P. H. and Marx, B. D. (1996). Flexible smoothing with B-splines and penalties. Statistical Science, 11, 89–121.
[4] Grover, G. and Deka, B. (2013). Spline-based hazards regression model for current status data: An application to simulated data on renal impairment. Indian Journal of Applied Research. 3, 534 – 537.
[5] Hougaard, P. (2000). Analysis of multivariate survival data. Springer: New York.
[6] Klein, J. P., Moeschberger, M. L., Li, Y. H. and Wang, S. T. (1992). Estimating random effects in the Framingham heart study, Survival Analysis: State of the Art, Kluwer Academic: Boston, Massachusetts, 99–120.
[7] Kim, Y-J., Kim, J., Nam, C., M., and Kim, Y. (2013). Statistical analysis of dependent current status data with application to tumorigenicity experiments. Taylor & Francis Group, LLC.
[8] Lu, M. and Li, C. (2017). Penalized estimation for proportional hazards model with current status data. Statistics in Medicine, 36, 4893–4907.
[9] Li, S., Hu, T., Wang, P. and Sun, J. (2017). Regression analysis of current status data in the presence of dependent censoring with applications to tumorigenicity experiments. Computational Statistics and Data Analysis, 110, 75-86.
[10] Lindsey, J. C. and Ryan, L. M. (1994). A comparison of continuous- and discrete-time three-state models for rodent tumorigenicity experiments. Environmental Health Perspectives Supplements, 102, 9–17.
[11] Ma, L., Hu, T. and Sun, J. (2015). Sieve maximum likelihood regression analysis of dependent current status data. Biometrika, 102, 731–738.
[12] Nocedal, J. and Wright, S. J. (1999). Numerical Optimization. Springer, New York.
[13] O’Sullivan, F. (1988). Fast computation of fully automated log-density and log-hazard estimators. SIAM Journal of Science and Statistical Computation. 9, 363–379.
[14] Ramsay, J. O. (1988). Monotone regression splines in action. Statistical science, 3, 425–441.
[15] Vaupel, J., Manton, K. and Stallard, E. (1979). The impact of heterogeneity in individual frailty in the dynamics of mortality. Demography, 16, 439–454.
[16] Wahba, G. (1983). Bayesian confidence intervals for the cross-validated smoothing spline. Journal of the Royal Statistical Society. Series B, 45, 133–150.
[17] Wang, L., McMahan, C., Hudgens, M. and Quresh, Z. (2016). A Flexible, Computationally Efficient Method for Fitting the PH Model to Interval-Censored Data. Biometrics, 72, 222–231.
[18] Wang, W. and Yan, J. (2018). splines2: An R package for computing Regression Spline Functions and Classes. Version 0.2.8.
[19] Zhang, Z., Sun, J. and Sun, L. (2005). Statistical analysis of current status data with informative observation times. Statistics in Medicine, 24, 1399–1407.
Cite This Article
  • APA Style

    Faisal, A., Iddi, S., Nortey, E. N. N., Doku-Amponsah, K. (2024). Penalized Likelihood Estimation for Current Status Data with Informative Censoring. Biomedical Statistics and Informatics, 9(3), 39-57. https://doi.org/10.11648/j.bsi.20240903.11

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    ACS Style

    Faisal, A.; Iddi, S.; Nortey, E. N. N.; Doku-Amponsah, K. Penalized Likelihood Estimation for Current Status Data with Informative Censoring. Biomed. Stat. Inform. 2024, 9(3), 39-57. doi: 10.11648/j.bsi.20240903.11

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    AMA Style

    Faisal A, Iddi S, Nortey ENN, Doku-Amponsah K. Penalized Likelihood Estimation for Current Status Data with Informative Censoring. Biomed Stat Inform. 2024;9(3):39-57. doi: 10.11648/j.bsi.20240903.11

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  • @article{10.11648/j.bsi.20240903.11,
      author = {Alhassan Faisal and Samuel Iddi and Ezekiel Nii Noye Nortey and Kwabena Doku-Amponsah},
      title = {Penalized Likelihood Estimation for Current Status Data with Informative Censoring},
      journal = {Biomedical Statistics and Informatics},
      volume = {9},
      number = {3},
      pages = {39-57},
      doi = {10.11648/j.bsi.20240903.11},
      url = {https://doi.org/10.11648/j.bsi.20240903.11},
      eprint = {https://article.sciencepublishinggroup.com/pdf/10.11648.j.bsi.20240903.11},
      abstract = {Current status data occurs when failure time of subjects in a survival study is only known to be either less or greater than the censoring time. Thus, the failure time is either left – or right – censored. Analyzing data of this structure under the Cox Proportional Hazards model with dependent censoring assumption can be challenging. To address this, a Penalized Maximum Likelihood Estimation (PMLE) approach was proposed. The unknown baseline cumulative hazard functions for both the failure time and the censoring time were estimated using splines. The advantage of penalized approach over unpenalized method is that that the desired smoothness level of the functions are controlled by their respective penalty terms. The possible dependence between the failure and censoring times was accounted for using the gamma-frailty model. An easy to implement hybrid computational algorithm is proposed to estimate the PMLEs and the Bayesian technique was employed for the estimation of the variances of the parameters. Extensive simulation studies were conducted to assess the statistical properties of the PMLEs. It was observed that the realized estimators were not only consistent, asymptotically normal and efficient, but also, were robust to the number of knots chosen, the proportion of dependent censoring used and the frailty distribution employed. The proposed PMLE method was further applied to real data obtained from tumorigenicity experiment.},
     year = {2024}
    }
    

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  • TY  - JOUR
    T1  - Penalized Likelihood Estimation for Current Status Data with Informative Censoring
    AU  - Alhassan Faisal
    AU  - Samuel Iddi
    AU  - Ezekiel Nii Noye Nortey
    AU  - Kwabena Doku-Amponsah
    Y1  - 2024/10/29
    PY  - 2024
    N1  - https://doi.org/10.11648/j.bsi.20240903.11
    DO  - 10.11648/j.bsi.20240903.11
    T2  - Biomedical Statistics and Informatics
    JF  - Biomedical Statistics and Informatics
    JO  - Biomedical Statistics and Informatics
    SP  - 39
    EP  - 57
    PB  - Science Publishing Group
    SN  - 2578-8728
    UR  - https://doi.org/10.11648/j.bsi.20240903.11
    AB  - Current status data occurs when failure time of subjects in a survival study is only known to be either less or greater than the censoring time. Thus, the failure time is either left – or right – censored. Analyzing data of this structure under the Cox Proportional Hazards model with dependent censoring assumption can be challenging. To address this, a Penalized Maximum Likelihood Estimation (PMLE) approach was proposed. The unknown baseline cumulative hazard functions for both the failure time and the censoring time were estimated using splines. The advantage of penalized approach over unpenalized method is that that the desired smoothness level of the functions are controlled by their respective penalty terms. The possible dependence between the failure and censoring times was accounted for using the gamma-frailty model. An easy to implement hybrid computational algorithm is proposed to estimate the PMLEs and the Bayesian technique was employed for the estimation of the variances of the parameters. Extensive simulation studies were conducted to assess the statistical properties of the PMLEs. It was observed that the realized estimators were not only consistent, asymptotically normal and efficient, but also, were robust to the number of knots chosen, the proportion of dependent censoring used and the frailty distribution employed. The proposed PMLE method was further applied to real data obtained from tumorigenicity experiment.
    VL  - 9
    IS  - 3
    ER  - 

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Author Information
  • Department of Statistics, Faculty of Physical Sciences, University for Development Studies, Tamale, Ghana

  • Department of Statistics and Actuarial Science, School of Physical and Mathematical Sciences, University of Ghana, Legon, Accra

  • Department of Statistics and Actuarial Science, School of Physical and Mathematical Sciences, University of Ghana, Legon, Accra

  • Department of Statistics and Actuarial Science, School of Physical and Mathematical Sciences, University of Ghana, Legon, Accra

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